Original papers
2024
2022
2021
2020
2019
2018
2017
2016
2015
2014
2012
2011
2010
2009
2008
- Moromizato R, Fukuda K, Suzuki S, Motomura T, Nagasato C, Hirakawa Y. (2024) Pyrenoid proteomics reveals independent evolution of the CO2-concentrating organelle in chlorarachniophytes. Proceedings of the National Academy of Sciences. 121 (10) e2318542121
- Harada R, Hirakawa Y, Yabuki A, Kim E, Yazaki E, Kamikawa R, Nakano K, Eliáš M, Inagaki Y. (2024) Encyclopedia of family A DNA polymerases localized in organelles: evolutionary contribution of bacteria including the proto-mitochondrion. Molecular Biology & Evolution 41: msae014.
- Hehenberger E, Boscaro V, James E.R, Hirakawa Y, Trznadel M, Mtawali M, Fiorito R, del Campo J, Karnkowska A, Kolisko M, Irwin N.A,T, Mathur V, Scheffrahn R.H, Keeling P.J. (2023) New Parabasalia symbionts Snyderella spp. and Daimonympha gen. nov. from South American Rugitermes termites and the parallel evolution of a cell with a rotating "head". Journal of Eukaryotic Microbiology e12987
- 平川泰久 (2023) クロララクニオン藻のピレノイド (Pyrenoid of chlorarachniophytes). Plant Morphology 35: 35-39.
2022
- Hirakawa Y, Hanawa Y, Yonede K, Suzuki I. (2022) Evolution of a chimeric mitochondrial carbonic anhydrase through gene fusion in a haptophyte alga. FEBS Letters 596: 3051-3059
- Bantu L, Chauhan S, Srikumar A, Hirakawa Y, Suzuki I, Hagemann M, Prakash J.S.S. A membrane-bound cAMP receptor protein, SyCRP1 mediates inorganic carbon response in Synechocystis sp. PCC 6803. BBA - Gene Regulatory Mechanisms 1865:194803.
2021
- Hirakawa Y. Senda M., Fukuda K., Yu H. Y., Ishida M., Taira M., Kinbara K., Senda T. (2021) Characterization of a novel type of carbonic anhydrase that acts without metal cofactors. BMC Biology 19: 105
2020
- Fukuda K., Cooney E.C., Irwin N.A.T., Keeling P.J., Hirakawa Y. (2020) High-efficiency transformation of the chlorarachniophyte Amorphochlora amoebiformis by electroporation. Algal Research 48:101903
- Faktorová D., Nisbet R.E.R., Fernández Robledo J.A., Casacuberta E., Sudek L., Allen A.E., Ares M.Jr., Aresté C., Balestreri C., Barbrook A.C, Beardslee P., Bender S., Booth D.S., Bouget F.Y., Bowler C., Breglia S.A., Brownlee C., Burger G., Cerutti H., Cesaroni R., Chiurillo M.A., Clemente T., Coles D.B., Collier J.L., Cooney E.C., Coyne K., Docampo R., Dupont C.L., Edgcomb V., Einarsson E., Elustondo P.A., Federici F., Freire-Beneitez V, Freyria N.J., Fukuda K., García P.A., Girguis P.R., Gomaa F., Gornik S.G., Guo J., Hampl V., Hanawa Y., Haro-Contreras E.R., Hehenberger E., Highfield A., Hirakawa Y., Hopes A., Howe C.J., Hu I, Ibañez J., Irwin N.A.T., Ishii Y., Janowicz N.E., Jones A.C., Kachale A., Fujimura-Kamada K., Kaur B., Kaye J.Z., Kazana E, Keeling P.J., King N., Klobutcher L.A., Lander N., Lassadi I., Li Z., Lin S., Lozano J.C., Luan F., Maruyama S., Matute T., Miceli C., Minagawa J., Moosburner M, Najle S.R., Nanjappa D., Nimmo I.C, Noble L., Novák Vanclová A.M.G., Nowacki M., Nuñez I., Pain A., Piersanti A., Pucciarelli S., Pyrih J., Rest J.S., Rius M., Robertson D., Ruaud A., Ruiz-Trillo I., Sigg M.A., Silver P.A, Slamovits C.H., Smith G.J., Sprecher B.N., Stern R., Swart E.C., Tsaousis A.D., Tsypin L., Turkewitz A., Turnšek J., Valach M., Vergé V., von Dassow P., von der Haar T., Waller R.F., Wang L., Wen X., Wheeler G., Woods A., Zhang H, Mock T., Worden A.Z., Lukeš J. (2020) Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods 17:481-494
- Harada Y., Hirakawa, Y., Yabuki A., Kashiyama Y., Maruyama M., Onuma R., Soukal P., Miyagishima S., Hampl V., Tanifuji G., Inagaki Y. (2020) Inventory and evolution of mitochondrion-localized family A DNA polymerases in Euglenozoa. Pathogens 9:257
- 松田向平、平川泰久 (2020) 微細藻類への遺伝子組換え最前線 Jpn. J. Phycol. 68: 157-160
2019
- Hirakawa Y. (2019) Multiple independent losses of photosynthesis in algae. Perspectives in Phycology DOI: 10.1127/pip/2019/0088
- Hirakawa Y., Watanabe A. (2019) Organellar DNA polymerases in complex plastid-bearing algae. Biomolecules 9:140
- Kashiyama Y., Yokoyama A., Shiratori T., Hess S., Not F., Bachy C., Gutierrez-Rodriguez A., Kawahara J., Suzaki T., Nakazawa M., Ishikawa T., Maruyama M., Wang M., Chen M., Gong Y., Seto K., Kagami M., Hamamoto Y., Honda D., Umetani T., Shihongi A., Kayama M., Matsuda T., Taira J., Yabuki A., Tsuchiya M., Hirakawa Y., Kawaguchi A., Nomura M., Nakamura A., Namba N., Matsumoto M., Tanaka T., Yoshino T., Higuchi R., Yamamoto A., Maruyama T., Yamaguchi A., Uzuka A., Miyagishima S., Tanifuji G., Kawachi M., Kinoshita Y., Tamiaki H. (2019) Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME Journal 13:1899-1910
- Sakamoto H., Hirakawa Y., Ishida K., Keeling P.J., Kita K., Matsuzaki M. (2019) Puromycin selection for stable transfectants of the oyster-infecting parasite Perkinsus marinus. Parasitology International 69:13-16
- 平川泰久 (2019) 光合成をやめた藻類もどき Jpn. J. Phycol. 67: 131-133
2018
- Suzuki S., Endoh R., Manabe R., Ohkuma M., Hirakawa Y. (2018) Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae Prototheca. Scientific Reports 8:940
2017
- del Campo J., James E.R., Hirakawa Y., Fiorito R., Kolisko M., Irwin N.A.T., Mathur V., Boscaro V., Hehenberger E., Karnkowska A., Scheffrahn R.H., Keeling P.J. (2017) Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure. Scientific Reports 7: 16349
- 平川泰久 (2017) クロララクニオン藻の色素体制御機構 BSJ-Review8C: 169-174
- Hirakawa Y. (2017) Chlorarachniophytes with complex secondary plastids of green algal origin. Advance in Botanical Research volume 84, Secondary endosymbioses, Academic press, Chapter 10, 359-394.
- Hirakawa Y., Nakayama T., Keilert N., Ishida K. (2017) Evolution of UhpC-type hexose-phosphate transporters in dinoflagellates. Phycological Research 65: 166-170
2016
- Suzuki S.*, Ishida K., Hirakawa Y.* (2016) Diurnal transcriptional regulation of endosymbiotically derived genes in the chlorarachniophyte Bigelowiella natans. Genome Biology and Evolution 8 : 2672-2682 *equally contributed
- Suzuki S., Hirakawa Y., Kofuji R., Sugita M., Ishida K. (2016) Plastid genome sequences of Gymnochlora stellata, Lotharella vacuolata, and Partenskyella glossopodia reveal remarkable structural conservation among chlorarachniophyte species. Journal of Plant Research 129: 581-590
- 平川泰久 (2016) 藻類の色素体分裂機構の進化 Jpn. J. Phycol. 64: 19-22
2015
- Hirakawa Y., Ishida K. (2015) Prospective function of FtsZ proteins in the secondary plastid of chlorarachniophyte algae. BMC Plant Biology 15: 276
- Suzuki S., Shirato S., Hirakawa Y., Ishida K. (2015) Nucleomorph genome sequences of two chlorarachniophytes, Amorphochlora amoebiformis and Lotharella vacuolata. Genome Biology and Evolution 7: 1533-1545
- 平川泰久 (2015) クロララクニオン藻の二次色素体の進化. Jpn. J. Protozool. 48:57-65.
2014
- Hirakawa Y. (2014) Complex plastids of chlorarachniophyte algae. Perspectives in Phycology 1: 87-92
- Hirakawa Y., Ishida K. (2014) Polyploidy of endosymbiotically derived genomes in complex algae. Genome Biology and Evolution 6: 974-980
- Hirakawa Y.*, Suzuki S.*, Archibald J.M., Keeling P.J., Ishida K. (2014). Overexpression of molecular chaperone genes in nucleomorph genomes. Molecular Biology and Evolution 31: 1437-1443 *equally contributed
- Burki F., Imanian B., Hehenberger E., Hirakawa Y, Maruyama S., Keeling P.J. (2014). Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates. Eukaryotic Cell 13: 246-255
2012
- Curtis B.A., Tanifuji G., Burki F., Gruber A., Irimia M., Maruyama S., Arias M.C., Ball S.G., Gile G.H., Hirakawa Y., Hopkins J.F., Kuo A., Rensing S.A., Schmutz J., Symeonidi A., Elias M., Eveleigh R.J., Herman E.K., Klute M.J., Nakayama T., Oborník M., Reyes-Prieto A., Armbrust E.V., Aves S.J., Beiko R.G., Coutinho P., Dacks J.B., Durnford D.G., Fast N.M., Green B.R., Grisdale C.J., Hempel F., Henrissat B., Höppner M.P., Ishida K., Kim E., Kořený L., Kroth P.G., Liu Y., Malik S.B., Maier U.G., McRose D., Mock T., Neilson J.A., Onodera N.T., Poole A.M., Pritham E.J., Richards T.A., Rocap G., Roy S.W., Sarai C., Schaack S., Shirato S., Slamovits C.H., Spencer D.F., Suzuki S., Worden A.Z., Zauner S., Barry K., Bell C., Bharti A.K., Crow J.A., Grimwood J., Kramer R., Lindquist E., Lucas S., Salamov A., McFadden G.I., Lane C.E., Keeling P.J., Gray M.W., Grigoriev I.V., Archibald J.M. (2012). Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature 492: 59-65
- Hirakawa Y., Burki F., Keeling P.J. (2012). Dual targeting of aminoacyl-tRNA synthetases to the mitochondrion and plastid in chlorarachniophytes. Journal of Cell Science 125: 6176-6184
- Burki F.*, Hirakawa Y.*, Keeling P.J. (2012). Intragenomic spread of plastid-targeting presequences in the coccolithophore Emiliania huxleyi. Molecular Biology and Evolution 29: 2109-2112 *equally contributed
- Hirakawa Y., Burki F., Keeling P.J. (2012). Genome-based reconstruction of the protein import machinery in the secondary plastid of a chlorarachniophyte alga. Eukaryotic Cell 11: 324-333
2011
- Hirakawa Y, Howe A., James E.R., Keeling P.J. (2011). Morphological diversity between culture strains of a chlorarachniophyte, Lotharella globosa. PLos ONE 6 (8): e23193
- Hirakawa Y., Burki F., Keeling P.J. (2011). Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga. Molecular Microbiology 80: 1439-1449
2010
- Hirakawa Y., Ishida K. (2010). Internal plastid-targeting signal found in a RubisCO small subunit protein of a chlorarachniophyte alga. The Plant Journal 64: 402-410
- Hirakawa Y., Gile G.H., Ota S., Keeling P.J., Ishida K. (2010). Characterization of periplastidal compartment targeting signals in chlorarachniophytes. Molecular Biology and Evolution 27: 1538-1545.
2009
- Hirakawa Y., Nagamune K., Ishida K (2009). Protein targeting into secondary plastids of chlorarachniophytes. Proceedings of the National Academy of Sciences of the USA 106: 12820-12825
2008
- Hirakawa Y., Kofuji R., Ishida K. (2008). Transient transformation of a chlorarachniophyte alga, Lotharella amoebiformis (Chlorarachniophyceae), with uidA and egfp reporter genes. Journal of Phycology 44: 818-820
Books
- 平川泰久「原生生物学事典」矢﨑 裕規・新倉 保・猪飼 桂・矢吹 彬憲・永宗 喜三郎・松崎 素道・白鳥 峻志・島野 智之・小林 富美惠 編、朝倉書店、第3章3項 p201-204、2023年
- 平川泰久「アメーバのはなし ―原生生物・人・感染症―」永宗喜三郎・島野智之・矢吹彬憲 編、朝倉書店、第2章2項 p65、第3章5項 p112-117、2018年
- 平川泰久 「新しいエネルギー藻類バイオマス」 渡邉信編集、みみずく舎、第4章2項 p140-143、第6章3項pp216-225、2010年
- 石田健一郎、小池さやか、平川泰久 「葉緑体の誕生と水平伝搬」 植物の進化:植物細胞工学シリーズ、秀潤社、第23巻、p183-193、2007年